TAP SWI/SNF_SNF2 in Porphyra umbilicalis

Full lineage¹: cellular organisms; Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra

Protein source: JGI


The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules

SNF2_N
AP2
PHD
zf-CCCH
HMG_box
Myb_DNA-binding

(Domain names are clickable)



List of proteins (18)

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namename additionClick button to show/hide sequence: Download sequence?
Pum0031s0041.1.ppacid=38017630 transcript=Pum0031s0041.1 locus=Pum0031s0041 ID=Pum0031s0041.1.V1.5 annot-version=v1.5
Pum0106s0032.1.ppacid=38009962 transcript=Pum0106s0032.1 locus=Pum0106s0032 ID=Pum0106s0032.1.V1.5 annot-version=v1.5
Pum0143s0023.1.ppacid=38009345 transcript=Pum0143s0023.1 locus=Pum0143s0023 ID=Pum0143s0023.1.V1.5 annot-version=v1.5
Pum0191s0020.1.ppacid=38009111 transcript=Pum0191s0020.1 locus=Pum0191s0020 ID=Pum0191s0020.1.V1.5 annot-version=v1.5
Pum0196s0004.1.ppacid=38014378 transcript=Pum0196s0004.1 locus=Pum0196s0004 ID=Pum0196s0004.1.V1.5 annot-version=v1.5
Pum0303s0011.1.ppacid=38017859 transcript=Pum0303s0011.1 locus=Pum0303s0011 ID=Pum0303s0011.1.V1.5 annot-version=v1.5
Pum0413s0012.1.ppacid=38010615 transcript=Pum0413s0012.1 locus=Pum0413s0012 ID=Pum0413s0012.1.V1.5 annot-version=v1.5
Pum0465s0003.1.ppacid=38013955 transcript=Pum0465s0003.1 locus=Pum0465s0003 ID=Pum0465s0003.1.V1.5 annot-version=v1.5
Pum0497s0007.1.ppacid=38013030 transcript=Pum0497s0007.1 locus=Pum0497s0007 ID=Pum0497s0007.1.V1.5 annot-version=v1.5
Pum0518s0001.1.ppacid=38011869 transcript=Pum0518s0001.1 locus=Pum0518s0001 ID=Pum0518s0001.1.V1.5 annot-version=v1.5
Pum0518s0016.1.ppacid=38011870 transcript=Pum0518s0016.1 locus=Pum0518s0016 ID=Pum0518s0016.1.V1.5 annot-version=v1.5
Pum0550s0002.1.ppacid=38008837 transcript=Pum0550s0002.1 locus=Pum0550s0002 ID=Pum0550s0002.1.V1.5 annot-version=v1.5
Pum0672s0005.1.ppacid=38011312 transcript=Pum0672s0005.1 locus=Pum0672s0005 ID=Pum0672s0005.1.V1.5 annot-version=v1.5
Pum0707s0009.1.ppacid=38012551 transcript=Pum0707s0009.1 locus=Pum0707s0009 ID=Pum0707s0009.1.V1.5 annot-version=v1.5
Pum1133s0001.1.ppacid=38009359 transcript=Pum1133s0001.1 locus=Pum1133s0001 ID=Pum1133s0001.1.V1.5 annot-version=v1.5
Pum1285s0001.1.ppacid=38016996 transcript=Pum1285s0001.1 locus=Pum1285s0001 ID=Pum1285s0001.1.V1.5 annot-version=v1.5
Pum1292s0001.1.ppacid=38009735 transcript=Pum1292s0001.1 locus=Pum1292s0001 ID=Pum1292s0001.1.V1.5 annot-version=v1.5
Pum1824s0001.1.ppacid=38016808 transcript=Pum1824s0001.1 locus=Pum1824s0001 ID=Pum1824s0001.1.V1.5 annot-version=v1.5
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A list of species letter codes included in the protein names can be found here (opens in new tab).

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¹ Information recieved using NCBI E-utilities and NCBI taxonomy database.
Impressum